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Sustainable Fisheries

Publications and References


Leone, A., Urso, I., Damalas, D., Martinsohn, J., Zanzi, A., Mariani, S., Sperone, E., Micarelli, P., Garibaldi, F., Megalofonou, P., Bargelloni, L., Franch, R., Macias, D., Prodöhl, P., Fitzpatrick, S., Stagioni, M., Tinti, F., Cariani, A. (2017) Genetic differentiation and phylogeography of Mediterranean-North Eastern Atlantic blue shark (Prionace glauca, L. 1758) using mitochondrial DNA: panmixia or complex stock structure? PeerJ 5:e4112 DOI 10.7717/peerj.4112



Berthier P., Beaumont M.A., Cornuet J.M., Luikart G. (2002) Likelihood-based estimation of the effective population size using temporal changes in allele frequencies: a genealogical approach. Genetics 160: 741-751.

Bianchi C.N. (2007) Biodiversity issues for the forthcoming tropical Mediterranean Sea. Hydrobiologia 580: 7-21.

Casey J.G. 1985. Transatlantic migrations of the blue shark; a case history of cooperative shark tagging. In: R.H. Stroud (ed.), Proceedings of the First World Angling Conference, Cap d'Agde, France, September 12-18, 1984, pp. 253-267.

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Damalas D., Megalofonou P. (2010). Environmental effects on blue shark (Prionace glauca) and oilfish (Ruvettus pretiosus) distribution based on fishery-dependent data from the eastern Mediterranean Sea. Journal of the Marine Biological Association of the United Kingdom 90(3): 467-480.

Damalas D., Megalofonou P. (2012). Occurrences of large sharks in the open waters of the southeastern Mediterranean Sea, Journal of Natural History 46: 2701-2723

De Metrio G., Petrosino G., Montanaro C., Matarrese A., Lenti M., Cecere E. (1984) Survey on summer-autumn population of Prionace glauca L. (Pisces, Chondricthyes) during the four year period 1978-1981 and its incidence on swordfish (Xiphias gladius L.) and albacore (Thunnus alalunga (Bonn.)) fishing. Oebalia 10: 105-116.

Diaz A.G., Serafy J.E. (2005) Longline-caught blue shark (Prionace glauca): factors affecting the numbers available for live release. Fish. Bull. 103: 720-724.

Dray S., Dufour A.B. (2007) The ade4 package: implementing the duality diagram for ecologists. Journal of Statistical Software 22: 1-20.

Ferretti F., Myers A. Ransom, Serena F., Lotze K. Heike (2008) Loss of Large Predatory Sharks from the Mediterranean Sea. Conserv. Biol. 22(4): 952-964.

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Fitzpatrick S., Shijvi M., Chapman D., Prodöhl P. (2010). Population Genetics in the Open Ocean - A Global Assessment of Genetic Structuring in the Blue Shark (Prionace glauca). In: Programm Booklet of The 14th Annual Scientific Conference of the European Elasmobranch Association, Galway, 10-13 November 2010, pp.16.

Fowler S.L., Cavanagh R.D., Camhi M., Burgess G.H., Cailliet G.M., Fordham S.V., Simpfendorfer C.A., Musick J.A. (comps and eds). (2005) Sharks, Rays and Chimaeras: The Status of the Chondrichthyan Fishes. Status Survey. pp. x + 461. IUCN/SSC Shark Specialist Group, IUCN, Gland, Switzerland and Cambridge, UK.

Francois O., Durand E. (2010) Spatially explicit Bayesian clustering models in population genetics. Molecular Ecology Resources 10: 773-784.

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Guillot G., Mortier F., Estoup A. (2005) GENELAND: a computer package for landscape genetics. Molecular Ecology Notes 5: 712-715.

Guillot G, Santos F, Estoup A (2008) Analysing georeferenced population genetics data with Geneland: a new algorithm to deal with null alleles and a friendly graphical user interface. Bioinformatics 24: 1406-1407.

Hansen M.M., Hemmer-Hansen J. (2007). Landscape genetics goes to sea. Journal of Biology 6(3).

Hubisz M.J., Falush D., Stephens M., Pritchard J.K. (2009) Inferring weak population structure with the assistance of sample group information. Molecular Ecology Resources 9: 1322-1332.

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Jombart T., Pontier D., Dufour A.B. (2009) Genetic markers in the playground of multivariate analysis. Heredity 102: 330-341.

Kleiber P., Clarke S., Bigelow K., Nakano H., McAllister M., Takeuchi Y. (2009) North Pacific Blue Shark Stock Assessment. NOAA Technical Memorandum NMFS-PIFSC-17. February 2009.

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Latch E, Dharmarajan G, Glaubitz JC, Rhodes OE J (2006) Relative performance of Bayesian clustering software for inferring population substructure and individual assignment at low levels of population differentiation. Conservation Genetics 7: 295-302.

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Luikart G., Cornuet J.M. (1999) Estimating the effective number of breeders from heterozygote excess in progeny. Genetics 151:1211-1216

Manel S., Berthoud F., Bellemain E., Gaudeul M., Luikart G., et al. (2007) A new individual-based spatial approach for identifying genetic discontinuities in natural populations. Molecular Ecology 16: 2031-2043.

Mantel N. (1967) The detection of disease clustering and a generalised regression approach. Cancer Research 27: 209-220.

Megalofonou P, Damalas D, Yannopoulos C, De Metrio G, Deflorio M, Serna De La J M, Macias D. (2000) By-catches and discards of sharks in the large pelagic fisheries in the Mediterranean Sea. Final Report of the Project No 97/50 DG XIV/C1. Commission of the European Communities. 336p + Annex.

Megalofonou P., Damalas D., Yannopoulos C. (2005) Composition and abundance of pelagic shark by-catch in the eastern Mediterranean Sea. Cybium 29(2): 135-140.

Megalofonou P., Yannopoulos C., Damalas D., De Metrio G., Deflorio M., Dela Serna J.M., Macias, D. (2005). Incidental catch and estimated discards of pelagic sharks from the swordfish and tuna fisheries in the Mediterranean Sea. Fishery Bulletin-NOAA, 103: 620-634.

Megalofonou P., Damalas D., De Metrio G. (2009)a. Biological characteristics of blue shark, Prionace glauca, in the Mediterranean Sea. Journal of the Marine Biological Association of the United Kingdom, 89(6): 1233-1242.

Megalofonou P., Damalas D., Deflorio M., De Metrio G. (2009)b. Modelling environmental, spatial, temporal, and operational effects on blue shark by-catches in the Mediterranean longline fishery. Journal of Applied Ichthyology 25: 47-55.

Myers R.A., Baum J.K., Shepherd T.D., Powers S.P., Peterson C.H. (2007) Cascading Effects of the Loss of Apex Predatory Sharks from a Coastal Ocean. Science 315 (5820): 1846-1850.

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Peterson B.K., Weber J.N., Kay E.H., Fisher H.S., Hoekstra H.E. (2012) Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species. PLoS ONE 7(5): e37135.

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Queiroz N., Humphries N.E., Mucientes G., Sousa L., Sims D.W. (2011) Interactions and spaceuse overlap between satellite-tracked blue sharks and longline fishing vessels. In: Programm Booklet of The 15th Annual Scientific Conference of the European Elasmobranch Association, Berlin.

Raj A., Stephens M., Pritchard J.K. (2014) fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets. Genetics 197(2): 573-589.

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Relini G., Mannini A., De Ranieri S., Bitetto I., Follesa M.C., Gancitano V., Manfredi C., Casciaro L., Sion L. (2010) Chondrichthyes caught during the Medits surveys in Italian waters. Biol. Mar. Mediterr. 17(1): 186-204.

Riccioni G., Stagioni M., Landi M., et al. (2013) Genetic Structure of Bluefin Tuna in the Mediterranean Sea Correlates with Environmental Variables. PLoS ONE 8, e80105.

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Selkoe K.A., Henzler C.M., Gaines S.D. (2008) Seascape genetics and the spatial ecology of marine populations. Fish and Fisheries 9: 363-377.

Serena F. (2005) Field identification guide to the sharks and rays of the Mediterranean and Black Sea. FAO Species Identification Guide for Fishery Purposes, Roma, FAO pp. 97

Silva A.A. (2008) Population Dynamics of the Blue Shark, Prionace glauca, in the North Atlantic Ocean. PhD thesis from School of Aquatic and Fishery Sciences, University of Washington.

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Storai T., Zinzula L., Repetto S., Zuffa M., Morgan A., Mandelman J. (2011) By-catch of large elasmobranchs in the traditional tuna traps (tonnare) of Sardinia from 1990 to 2009. Fisheries Research, pp. 74-79

Taguchi M., King J., Wetklo M., Withler M., Yokawa K. (2014) Population genetic structure and demographic history of Pacific blue sharks (Prionace glauca) inferred from mitochondrial DNA analysis. CSIRO publishing 2014.

Ussami L.H.F., Mendonça F.F., Pereira L.H.G., Teixeira A.F., Oliveira C., Gadig O.B.F., Foresti F. (2011) Analysis of genetic population structure of the blue shark, Prionace glauca (Chondrichthyes, Carcharhinidae) in Brazilian coast using microsatellite markers. In: Resumos do 57º Congresso Brasileiro de Genética 30 agosto- 2 setembro 2011.

Verìssimo A., Sanpaio I., McDowell J., Alexandrino P. (2013) Genetic population structure among Atlantic nurseries of the highly mobile oceanic Blue Shark, Prionace glauca. In: Programm Booklet of The 17th Annual Scientific Conference of the European Elasmobranch Association, Plymouth, UK, 1-3 November 2013, pp.42.

Wang S., Meyer E., McKay J.K., Matz M.V. (2012). 2b-RAD: a simple and flexible method for genome-wide genotyping. Nature methods 9(8), 808-810.

Wang J., Whitlock M.C. (2003) Estimating Effective Population Size and Migration Rates From Genetic Samples Over Space and Time. Genetics 163, 429-446.

Waples R.S. (2002) Definition and estimation of effective population size in the conservation of endangered species. In: Population Viability Analysis (eds Beissinger SR, McCullough DR), pp. 147-168. University of Chicago Press, Chicago.